Gene | Cx3cl1 |
Chromosome | 8 |
Deletion Start | 94,780,569 |
Deletion End | 94,772,268 |
Deletion Size | 8,302 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 94,772,990 | 94,773,011 | CCATTCCACCTCCTTTAACCTC |
TUP | 94,773,012 | 94,773,035 | TAGAGCTCCATCCTCAGGGAGGGC |
TUR | 94,773,066 | 94,773,086 | CCACCTTCTCTGAGCGACAAC |
TDF | 94,779,671 | 94,779,692 | CAAGTTTGAGAAGCGGGTGGAC |
TDP | 94,779,697 | 94,779,719 | TGACACCTGGGATCACCTTGGCC |
TDR | 94,779,746 | 94,779,765 | TGGCGGATTCAGGCTTTGTC |
PCR Primers
Primer | Sequence |
SU | TAACCCTGCTAACCCACCAG |
SD | ACATAGGGCAGATAGCACCG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 95 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17113A-E4 | VGB6 | C57BL/6NTac | |
17113C-F3 | VGB6 | C57BL/6NTac | |
17113C-C9 | VGB6 | C57BL/6NTac | |