Gene | Slc11a1 |
Chromosome | 1 |
Deletion Start | 74,385,584 |
Deletion End | 74,375,318 |
Deletion Size | 10,267 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 74,376,203 | 74,376,225 | CGTATTTGCGAGTGCATGTGTAG |
TUP | 74,376,227 | 74,376,253 | TGTGTCCATTATAGAGCATGCGCGTGG |
TUR | 74,376,258 | 74,376,280 | TGACTCTCACAAGTTGTCCTCTG |
TDF | 74,384,953 | 74,384,972 | CGGGCTTAACCTCACCACAC |
TDP | 74,384,974 | 74,384,997 | CCTTGCCAAGTCAGTGATGGAGCC |
TDR | 74,384,999 | 74,385,017 | AGCCACTTGGAGGCACTTC |
PCR Primers
Primer | Sequence |
SU | GAAGGACCAGAAATCGGAGG |
SD | GAGACCCGACCTAGAACTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 65 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17181A-A4 | VGB6 | C57BL/6NTac | |
17181A-A7 | VGB6 | C57BL/6NTac | |
17181A-B5 | VGB6 | C57BL/6NTac | |
17181A-C12 | VGB6 | C57BL/6NTac | |
17181A-E9 | VGB6 | C57BL/6NTac | |
17181A-F6 | VGB6 | C57BL/6NTac | |