Gene | 3110001I22Rik |
Chromosome | 16 |
Deletion Start | 13,677,977 |
Deletion End | 13,677,042 |
Deletion Size | 936 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 13,677,063 | 13,677,081 | GGTCACCGTCCAGGATCAG |
TUP | 13,677,082 | 13,677,111 | TGTACAGAAGAGACAAGATGTGGCCTAACA |
TUR | 13,677,172 | 13,677,192 | GGCTTGCAGAAAGATCACCTC |
TDF | 13,677,759 | 13,677,782 | CGCCGTAAAGCAATAGTGTCAAAG |
TDP | 13,677,794 | 13,677,823 | TGAACAAGCCTACTACCAAGACTGTGAGAC |
TDR | 13,677,829 | 13,677,852 | CAACCAGCATTTTCACCACCATTC |
PCR Primers
Primer | Sequence |
SU | AGTATGGATCCTCTTGGCCC |
SD | AAACCACAACTCGAATCCTAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 130 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17285A-A8 | VGB6 | C57BL/6NTac | |
17285A-H11 | VGB6 | C57BL/6NTac | |
17285A-H3 | VGB6 | C57BL/6NTac | |
17285A-E9 | VGB6 | C57BL/6NTac | |
17285A-H7 | VGB6 | C57BL/6NTac | |
17285A-B3 | VGB6 | C57BL/6NTac | |