Gene | Aif1l |
Chromosome | 2 |
Deletion Start | 31,971,068 |
Deletion End | 31,950,354 |
Deletion Size | 20,715 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 31,951,146 | 31,951,164 | GTCAGGGCCTCCTGGATTG |
TUP | 31,951,166 | 31,951,188 | CAAAGCACAGAGGTGGCACAGCC |
TUR | 31,951,214 | 31,951,237 | GAGACACCAGTCACATCTGAACAC |
TDF | 31,970,758 | 31,970,780 | TCTGTGACTTAGGATCACCAACC |
TDP | 31,970,784 | 31,970,806 | CCCTTCCACACAGCTAGCCCAGG |
TDR | 31,970,809 | 31,970,829 | TGCAGCGTCCTCAACAGAATG |
PCR Primers
Primer | Sequence |
SU | CCGTATTTGCACCAACACAC |
SD | TGTCGCTGAGAATGGACAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 72 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17302A-A8 | VGB6 | C57BL/6NTac | |
17302A-C9 | VGB6 | C57BL/6NTac | |
17302A-F3 | VGB6 | C57BL/6NTac | |
17302A-C11 | VGB6 | C57BL/6NTac | |