Gene | Arrdc1 |
Chromosome | 2 |
Deletion Start | 24,935,142 |
Deletion End | 24,925,594 |
Deletion Size | 9,549 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 24,934,752 | 24,934,770 | GTCTGTGCAAGGGCCTAAG |
TUP | 24,934,721 | 24,934,745 | TTCATTCACTATGCCCAGGCAACCC |
TUR | 24,934,675 | 24,934,699 | ACAACTGAACAAGGGAAGACTGAAG |
TDF | 24,926,344 | 24,926,364 | CGTGCTCAGTGGCAAGAACAG |
TDP | 24,926,324 | 24,926,343 | ATCCTGGTGCCTGCCCTGCC |
TDR | 24,926,260 | 24,926,284 | GCAACACCAAACCTGAAGGTAATAG |
PCR Primers
Primer | Sequence |
SU | AGGACTGGCCTGTTGTGAAC |
SD | GGTTCAAATGAGGAGCTTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 105 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17312A-G6 | VGB6 | C57BL/6NTac | |
17312A-C11 | VGB6 | C57BL/6NTac | |
17312A-C9 | VGB6 | C57BL/6NTac | |
17312A-A10 | VGB6 | C57BL/6NTac | |