Gene | BC055324 |
Chromosome | 1 |
Deletion Start | 163,994,717 |
Deletion End | 163,954,127 |
Deletion Size | 40,591 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 163,994,354 | 163,994,372 | TCGGTCGCACTTGCCTAAG |
TUP | 163,994,323 | 163,994,345 | ATGCCCGCGCTGGTGCTCAGTAT |
TUR | 163,994,298 | 163,994,319 | CCTTCAGCTCTCACGCTTCATC |
TDF | 163,954,516 | 163,954,535 | CATTGGGAACCGTTGCACAG |
TDP | 163,954,490 | 163,954,515 | TGCGACTTCTTGTCTGCCACATACAA |
TDR | 163,954,467 | 163,954,489 | GCTACTACTCTCCACGTCCTAAC |
PCR Primers
Primer | Sequence |
SU | CCTATTCTCGAACGCACCTC |
SD | CAGTCTGTCCCTCTCCTTCG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 69 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17318A-B4 | VGB6 | C57BL/6NTac | |
17318C-G4 | VGB6 | C57BL/6NTac | |
17318C-H2 | VGB6 | C57BL/6NTac | |