Gene | Ccdc22 |
Chromosome | X |
Deletion Start | 7,605,290 |
Deletion End | 7,594,013 |
Deletion Size | 11,278 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 7,604,659 | 7,604,682 | TCCTATGTAGCTTTCCCAAACCTC |
TUP | 7,604,633 | 7,604,656 | AGATCTAGGAGGCCTTGCCATGCA |
TUR | 7,604,612 | 7,604,630 | GGGCACCAGGACATTGTTC |
TDF | 7,594,142 | 7,594,162 | GACAGAGATGGGCAAGAAGAC |
TDP | 7,594,113 | 7,594,141 | TTTGAGCAACCTGGAGAAGATCTGTGAGG |
TDR | 7,594,073 | 7,594,090 | CCCAAGAGGCCAGCATTC |
PCR Primers
Primer | Sequence |
SU | CCCAGTCGTAGCAATTATGTC |
SD | CACACCGACTCTCCAAGATG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 90 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17324A-D8 | VGB6 | C57BL/6NTac | |
17324A-H1 | VGB6 | C57BL/6NTac | |
17324A-H5 | VGB6 | C57BL/6NTac | |
17324A-H10 | VGB6 | C57BL/6NTac | |