17376   Gnat2     Status: ES cell colonies screened / QC positives

GeneGnat2
Chromosome3
Deletion Start108,100,898
Deletion End108,093,252
Deletion Size7,647
Genome Build38
MGI IDMGI:95779
NCBI Gene ID14686
BAC ID154D12
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF108,093,327108,093,346GCTGACAAGGAAGCCAAGAC
TUP108,093,349108,093,370TCAAGCTGCTGTTGCTCGGTGA
TUR108,093,400108,093,422CTGAACCAGAGGGAGAGGGATAC
TDF108,100,254108,100,276TCTGGGAAAGAGCAGACAGATAC
TDP108,100,278108,100,301CCAGAGCCACTGACCGTTCCAAGG
TDR108,100,303108,100,324GGGTCTGACTTTCTGGTAGGTG

PCR Primers

PrimerSequence
SUCAGAAGCCAGATCATTTCCC
SDATGGTAGTCCATCAGGCAGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR96 bp++-
TDFTDR71 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17376A-B1VGB6C57BL/6NTac
17376A-C6VGB6C57BL/6NTac
17376A-H7VGB6C57BL/6NTac
17376A-C12VGB6C57BL/6NTac
17376A-D8VGB6C57BL/6NTac
17376A-C11VGB6C57BL/6NTac