Gene | Hspd1 |
Chromosome | 1 |
Deletion Start | 55,086,936 |
Deletion End | 55,078,190 |
Deletion Size | 8,747 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 55,086,164 | 55,086,185 | GGTTGCTGGGATTTGAAGGTTG |
TUP | 55,086,140 | 55,086,162 | TGGGACCTTCGGAAGAGCAGTCA |
TUR | 55,086,114 | 55,086,134 | AAAGATGGCTCAGCGGGTAAG |
TDF | 55,078,543 | 55,078,565 | GAACATGGTGGAAAAAGGGATCA |
TDP | 55,078,515 | 55,078,538 | TCCAACAAAGGTAAGTGATTCAGC |
TDR | 55,078,482 | 55,078,502 | TGCAGAGAGCAAGACATCCAG |
PCR Primers
Primer | Sequence |
SU | GCATTTAGAACCTGCCTTGC |
SD | CATCAAGACCATGGAAAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17389A-H10 | VGB6 | C57BL/6NTac | |
17389A-A8 | VGB6 | C57BL/6NTac | |
17389A-A9 | VGB6 | C57BL/6NTac | |
17389A-H8 | VGB6 | C57BL/6NTac | |
17389A-F9 | VGB6 | C57BL/6NTac | |
17389A-E11 | VGB6 | C57BL/6NTac | |