17393   Irak2     Status: ES cell colonies screened / QC positives

GeneIrak2
Chromosome6
Deletion Start113,672,936
Deletion End113,638,551
Deletion Size34,386
Genome Build38
MGI IDMGI:2429603
NCBI Gene ID108960
BAC ID423I8
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF113,639,287113,639,307GTAGCCCTGGTACTTGCTTTG
TUP113,639,309113,639,333AGATCAGGCTGGCCTGGAACTAACA
TUR113,639,337113,639,357CAGCAGGAGAGGCAGGTAGAG
TDF113,672,781113,672,798TTGGGTTTGCCCGGAGAC
TDP113,672,804113,672,830TTTCTGGAGTGAAGCAGATGTCGTCCA
TDR113,672,850113,672,868CGCTGATTCGGTGGCTTTG

PCR Primers

PrimerSequence
SUTCAGCACAAGGTTTGATTCG
SDTCTCCGTGACAGCCTCAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR71 bp++-
TDFTDR88 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17393A-A11VGB6C57BL/6NTac
17393A-C6VGB6C57BL/6NTac
17393A-D1VGB6C57BL/6NTac
17393A-F9VGB6C57BL/6NTac
17393A-E1VGB6C57BL/6NTac
17393A-F11VGB6C57BL/6NTac