Gene | Magix |
Chromosome | X |
Deletion Start | 7,680,995 |
Deletion End | 7,674,900 |
Deletion Size | 6,096 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 7,680,288 | 7,680,309 | TGTTGAGTGCTCAGAGGTGTTC |
TUP | 7,680,256 | 7,680,284 | TCTATTGCTGTCAAATGGCTACCTTCGGG |
TUR | 7,680,227 | 7,680,244 | CATTGCCCGCTGCCTTAC |
TDF | 7,675,213 | 7,675,237 | TGTCTATTCCACCACCCAATCTAAC |
TDP | 7,675,183 | 7,675,209 | TAGTCTTGCTATCTCCAGATCGCAGCC |
TDR | 7,675,153 | 7,675,171 | GAGACTCCACCCTGCTTCC |
PCR Primers
Primer | Sequence |
SU | GTCTCCAGTTAAGAGAAGCAG |
SD | CGAAGGGACTTCATCGAAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17399A-B8 | VGB6 | C57BL/6NTac | |
17399A-C7 | VGB6 | C57BL/6NTac | |
17399A-D2 | VGB6 | C57BL/6NTac | |
17399A-D8 | VGB6 | C57BL/6NTac | |
17399A-E5 | VGB6 | C57BL/6NTac | |
17399A-F12 | VGB6 | C57BL/6NTac | |