17433   Nr1h3     Status: ES cell colonies screened / QC positives

GeneNr1h3
Chromosome2
Deletion Start91,193,656
Deletion End91,184,275
Deletion Size9,382
Genome Build38
MGI IDMGI:1352462
NCBI Gene ID22259
BAC ID259C3
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 2

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF91,192,75391,192,773ACCCATTCTCCCGTGCTTCTC
TUP91,192,72891,192,751TGGGCTCAGATTCTGCAACGGAGT
TUR91,192,69191,192,710CCCTGGTCTCCTGCATCTTG
TDF91,185,13291,185,154AAACCTGGAGACCTGTTAGTGAC
TDP91,185,10191,185,129CCTAGCCTGAGGAAGTTGAGTTACAGGGT
TDR91,185,08191,185,100ATGGCGGGAGCAGGAAGAAC

PCR Primers

PrimerSequence
SUGAGAGACTCCTGAATTCAGC
SDCTTGGCCTTCCTGTTTCAAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR83 bp++-
TDFTDR74 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17433A-C12VGB6C57BL/6NTac
17433A-G3VGB6C57BL/6NTac
17433A-A7VGB6C57BL/6NTac
17433A-B9VGB6C57BL/6NTac