Gene | Pacsin3 |
Chromosome | 2 |
Deletion Start | 91,264,319 |
Deletion End | 91,260,211 |
Deletion Size | 4,109 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,260,483 | 91,260,502 | AACGTGCCCGCATTGAGAAG |
TUP | 91,260,504 | 91,260,523 | CCTACGCCCAGCAGCTGGCT |
TUR | 91,260,592 | 91,260,613 | GGTCCCACCCTCATAACCTTTG |
TDF | 91,263,954 | 91,263,974 | GACGAAGAAAGCCAGGGACTC |
TDP | 91,263,977 | 91,263,999 | TCCTCACAGGCTGCTCAGGGTCC |
TDR | 91,264,081 | 91,264,101 | GGCCGACAAACTGGAGGATAC |
PCR Primers
Primer | Sequence |
SU | ACCAGTCTGGCATTCTCAGC |
SD | CTCCCACCAGCAAGAGTAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 131 bp | + | + | - |
TDF | TDR | 148 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17439A-B10 | VGB6 | C57BL/6NTac | |
17439A-C1 | VGB6 | C57BL/6NTac | |
17439A-D1 | VGB6 | C57BL/6NTac | |
17439A-H6 | VGB6 | C57BL/6NTac | |
17439A-E1 | VGB6 | C57BL/6NTac | |
17439A-G4 | VGB6 | C57BL/6NTac | |