17478   Rab3ip     Status: ES cell colonies screened / QC positives

GeneRab3ip
Chromosome10
Deletion Start116,939,448
Deletion End116,906,996
Deletion Size32,453
Genome Build38
MGI IDMGI:105933
NCBI Gene ID216363
BAC ID166E13
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 10

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF116,938,640116,938,664GAACAAGCTAGATGCAGTTGAAGAC
TUP116,938,612116,938,637AACAAGCCAGAGAAGGAGCAGGAGCC
TUR116,938,569116,938,587CGCTCGGCCTCAAACTAAC
TDF116,907,233116,907,252TTGGTGTTAGGCGTCAGGTG
TDP116,907,202116,907,229CATTGGGAAATGCCGAGTTTGGGTTTCA
TDR116,907,153116,907,177CGTGTCATCTCAACTACTGCTCAAG

PCR Primers

PrimerSequence
SUGTGTTAGCACCTGGTCATGG
SDGAAGGAGTCCTGTCCACCTG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR96 bp++-
TDFTDR100 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17478A-H5VGB6C57BL/6NTac
17478A-B6VGB6C57BL/6NTac
17478A-F12VGB6C57BL/6NTac
17478A-F9VGB6C57BL/6NTac
17478A-A6VGB6C57BL/6NTac
17478A-C8VGB6C57BL/6NTac