Gene | Rab3ip |
Chromosome | 10 |
Deletion Start | 116,939,448 |
Deletion End | 116,906,996 |
Deletion Size | 32,453 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 116,938,640 | 116,938,664 | GAACAAGCTAGATGCAGTTGAAGAC |
TUP | 116,938,612 | 116,938,637 | AACAAGCCAGAGAAGGAGCAGGAGCC |
TUR | 116,938,569 | 116,938,587 | CGCTCGGCCTCAAACTAAC |
TDF | 116,907,233 | 116,907,252 | TTGGTGTTAGGCGTCAGGTG |
TDP | 116,907,202 | 116,907,229 | CATTGGGAAATGCCGAGTTTGGGTTTCA |
TDR | 116,907,153 | 116,907,177 | CGTGTCATCTCAACTACTGCTCAAG |
PCR Primers
Primer | Sequence |
SU | GTGTTAGCACCTGGTCATGG |
SD | GAAGGAGTCCTGTCCACCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17478A-H5 | VGB6 | C57BL/6NTac | |
17478A-B6 | VGB6 | C57BL/6NTac | |
17478A-F12 | VGB6 | C57BL/6NTac | |
17478A-F9 | VGB6 | C57BL/6NTac | |
17478A-A6 | VGB6 | C57BL/6NTac | |
17478A-C8 | VGB6 | C57BL/6NTac | |