Gene | Stard8 |
Chromosome | X |
Deletion Start | 99,073,226 |
Deletion End | 99,064,404 |
Deletion Size | 8,823 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 99,064,732 | 99,064,752 | ACCTCCACTGCTTGGTTTGTC |
TUP | 99,064,761 | 99,064,790 | AATTCCTTGAACAGGAGAAGGGACGGGACA |
TUR | 99,064,799 | 99,064,819 | CCATCGAGCCAATGACCTTTC |
TDF | 99,072,321 | 99,072,342 | GGAGCCCAGTAGCCATAAGAAG |
TDP | 99,072,345 | 99,072,367 | AGTGCCAGGCCCTGCAGTCTGAT |
TDR | 99,072,403 | 99,072,426 | CCAAATGGGTAGGGATAGGAAGAC |
PCR Primers
Primer | Sequence |
SU | TCTCAGCATGACACCTTTGG |
SD | CAAAGGCAGGATCAGACCTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 106 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17514A-B11 | VGB6 | C57BL/6NTac | |
17514A-E6 | VGB6 | C57BL/6NTac | |
17514A-E11 | VGB6 | C57BL/6NTac | |
17514A-E12 | VGB6 | C57BL/6NTac | |
17514A-H8 | VGB6 | C57BL/6NTac | |
17514A-F11 | VGB6 | C57BL/6NTac | |