Gene | Pmm2 |
Chromosome | 16 |
Deletion Start | 8,655,754 |
Deletion End | 8,637,778 |
Deletion Size | 17,977 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 8,638,068 | 8,638,087 | GCCCTCTGACCTGCTGTTTC |
TUP | 8,638,093 | 8,638,114 | CCCAGCCCTGTCACCTTTGGCT |
TUR | 8,638,131 | 8,638,153 | AGACGACTGAGAACCTGCCTTTG |
TDF | 8,655,645 | 8,655,663 | TCCCTTGACCCGAGGAGTG |
TDP | 8,655,664 | 8,655,691 | CCGGACTGACCAACAACACTGAAAGGTC |
TDR | 8,655,732 | 8,655,751 | TGGCTCATTGGCAAGCACAG |
PCR Primers
Primer | Sequence |
SU | TGTCACCGGAAAGTTGAAGG |
SD | CCAAAGCATAAGGGACCCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 107 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17665A-A8 | VGB6 | C57BL/6NTac | |
17665A-F2 | VGB6 | C57BL/6NTac | |
17665A-E10 | VGB6 | C57BL/6NTac | |