Gene | Smarcal1 |
Chromosome | 1 |
Deletion Start | 72,616,574 |
Deletion End | 72,585,699 |
Deletion Size | 30,876 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 72,586,307 | 72,586,327 | GGGAGCGTGCATAAAGACTGG |
TUP | 72,586,330 | 72,586,356 | ATCGCTTCCGGGTAAAGATCGGCTACA |
TUR | 72,586,374 | 72,586,394 | GCTGGGCAGAGACTTAAACAC |
TDF | 72,616,030 | 72,616,051 | GTGGATGCTGGGAATCAAAGTG |
TDP | 72,616,056 | 72,616,082 | CCTCTGCATGAGCAACAAATGCTCTGA |
TDR | 72,616,101 | 72,616,121 | GAACGAGGAGTGGCAAGGATG |
PCR Primers
Primer | Sequence |
SU | TGGCTAGCAAATGAGAAGGG |
SD | TCAGGATTGCCTCAGGTTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 92 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17683A-A9 | VGB6 | C57BL/6NTac | |
17683A-B9 | VGB6 | C57BL/6NTac | |
17683A-D5 | VGB6 | C57BL/6NTac | |
17683A-F9 | VGB6 | C57BL/6NTac | |
17683A-G1 | VGB6 | C57BL/6NTac | |