17683   Smarcal1     Status: ES cell colonies screened / QC positives

GeneSmarcal1
Chromosome1
Deletion Start72,616,574
Deletion End72,585,699
Deletion Size30,876
Genome Build38
MGI IDMGI:1859183
NCBI Gene ID54380
BAC ID448F22
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 1

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF72,586,30772,586,327GGGAGCGTGCATAAAGACTGG
TUP72,586,33072,586,356ATCGCTTCCGGGTAAAGATCGGCTACA
TUR72,586,37472,586,394GCTGGGCAGAGACTTAAACAC
TDF72,616,03072,616,051GTGGATGCTGGGAATCAAAGTG
TDP72,616,05672,616,082CCTCTGCATGAGCAACAAATGCTCTGA
TDR72,616,10172,616,121GAACGAGGAGTGGCAAGGATG

PCR Primers

PrimerSequence
SUTGGCTAGCAAATGAGAAGGG
SDTCAGGATTGCCTCAGGTTTC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR88 bp++-
TDFTDR92 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17683A-A9VGB6C57BL/6NTac
17683A-B9VGB6C57BL/6NTac
17683A-D5VGB6C57BL/6NTac
17683A-F9VGB6C57BL/6NTac
17683A-G1VGB6C57BL/6NTac