Gene | Socs7 |
Chromosome | 11 |
Deletion Start | 97,389,729 |
Deletion End | 97,362,645 |
Deletion Size | 27,085 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 97,363,452 | 97,363,473 | GCAAGCGACAAAGTTCCATTTC |
TUP | 97,363,475 | 97,363,501 | TGTTTCGTTTCCCTCGTTTTCCCCTAC |
TUR | 97,363,515 | 97,363,535 | TCCACAGCTCAGCTCTAACAG |
TDF | 97,389,106 | 97,389,124 | TTGAAGGACTGCCACCAAC |
TDP | 97,389,125 | 97,389,152 | TCCAGTACAGCTGCTCTATCCAGTGTCC |
TDR | 97,389,154 | 97,389,176 | GAGGGACTTGACATTGCTGAATC |
PCR Primers
Primer | Sequence |
SU | TCCTGAGCCGCCTCCTCG |
SD | AACTTCCAAGTGGATCACAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 84 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17687A-C4 | VGB6 | C57BL/6NTac | |
17687A-F9 | VGB6 | C57BL/6NTac | |
17687A-F5 | VGB6 | C57BL/6NTac | |
17687A-C3 | VGB6 | C57BL/6NTac | |
17687A-G10 | VGB6 | C57BL/6NTac | |