Gene | Wdr47 |
Chromosome | 3 |
Deletion Start | 108,644,685 |
Deletion End | 108,609,889 |
Deletion Size | 34,797 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 108,609,979 | 108,609,998 | CTGGCGCTGGAGAAGGAAAG |
TUP | 108,609,999 | 108,610,020 | TGGAGTCATAAATGGCCTGTTT |
TUR | 108,610,024 | 108,610,048 | CGTACCTCAGGAAGAGCATATCATC |
TDF | 108,643,887 | 108,643,904 | TGAGGCAGGGCAGACTTG |
TDP | 108,643,911 | 108,643,938 | TCGTGACACTGTAGGAAGTTGACGTGTT |
TDR | 108,643,940 | 108,643,964 | TCTCTTTCCTGGGTTGACTATGTTC |
PCR Primers
Primer | Sequence |
SU | CTGTCACTGCTAGACTATTCTG |
SD | GGATCGTGACAAGAGCAAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17709A-B8 | VGB6 | C57BL/6NTac | |
17709A-G3 | VGB6 | C57BL/6NTac | |
17709A-B5 | VGB6 | C57BL/6NTac | |
17709A-D2 | VGB6 | C57BL/6NTac | |
17709A-D3 | VGB6 | C57BL/6NTac | |
17709A-F10 | VGB6 | C57BL/6NTac | |