Gene | Zkscan17 |
Chromosome | 11 |
Deletion Start | 59,503,770 |
Deletion End | 59,487,012 |
Deletion Size | 16,759 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 59,503,112 | 59,503,130 | GCCCTGATCTGCTGCTTTC |
TUP | 59,503,088 | 59,503,111 | TGGGATTGCAGCTCAAGCACTGTG |
TUR | 59,503,061 | 59,503,079 | CGCCATCGTCAATCACCAC |
TDF | 59,487,613 | 59,487,634 | AGGTGCAAACCTCACAGAAATC |
TDP | 59,487,585 | 59,487,610 | ACGTGTGCCCAAACTGTGGAAAGATC |
TDR | 59,487,552 | 59,487,572 | CAGGTGCCGGATGAAGTTGAC |
PCR Primers
Primer | Sequence |
SU | TGCCAGTGTCCTGTTGAATC |
SD | AAATGTGACCTCCTGATGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17719A-D6 | VGB6 | C57BL/6NTac | |
17719A-F7 | VGB6 | C57BL/6NTac | |
17719A-F8 | VGB6 | C57BL/6NTac | |
17719A-F11 | VGB6 | C57BL/6NTac | |
17719A-G12 | VGB6 | C57BL/6NTac | |
17719A-H10 | VGB6 | C57BL/6NTac | |