17719   Zkscan17     Status: ES cell colonies screened / QC positives

GeneZkscan17
Chromosome11
Deletion Start59,503,770
Deletion End59,487,012
Deletion Size16,759
Genome Build38
MGI IDMGI:2679270
NCBI Gene ID268417
BAC ID248K7
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 11

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF59,503,11259,503,130GCCCTGATCTGCTGCTTTC
TUP59,503,08859,503,111TGGGATTGCAGCTCAAGCACTGTG
TUR59,503,06159,503,079CGCCATCGTCAATCACCAC
TDF59,487,61359,487,634AGGTGCAAACCTCACAGAAATC
TDP59,487,58559,487,610ACGTGTGCCCAAACTGTGGAAAGATC
TDR59,487,55259,487,572CAGGTGCCGGATGAAGTTGAC

PCR Primers

PrimerSequence
SUTGCCAGTGTCCTGTTGAATC
SDAAATGTGACCTCCTGATGGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR70 bp++-
TDFTDR83 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17719A-D6VGB6C57BL/6NTac
17719A-F7VGB6C57BL/6NTac
17719A-F8VGB6C57BL/6NTac
17719A-F11VGB6C57BL/6NTac
17719A-G12VGB6C57BL/6NTac
17719A-H10VGB6C57BL/6NTac