Gene | Arhgap23 |
Chromosome | 11 |
Deletion Start | 97,476,168 |
Deletion End | 97,451,530 |
Deletion Size | 24,639 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 97,452,134 | 97,452,155 | TGGATGACATCGGGTACATTGG |
TUP | 97,452,165 | 97,452,190 | CTATAGCCCATCATTCCAGCGCCGGA |
TUR | 97,452,208 | 97,452,227 | GGTGAGTCCCGGAAGGAGAG |
TDF | 97,475,298 | 97,475,317 | CCCGTTTCCTTCCTCCTGTC |
TDP | 97,475,324 | 97,475,352 | ATCCGGGATCTCCCAGGACACTACTATGA |
TDR | 97,475,383 | 97,475,401 | TGAGTGGTCAGCAATGGTC |
PCR Primers
Primer | Sequence |
SU | TTTGTGGCTAAAGGCTGTCC |
SD | CTTCCAATCTTGTTCCTCGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 104 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17727A-A7 | VGB6 | C57BL/6NTac | |
17727A-B5 | VGB6 | C57BL/6NTac | |
17727A-H11 | VGB6 | C57BL/6NTac | |
17727A-D2 | VGB6 | C57BL/6NTac | |
17727A-F8 | VGB6 | C57BL/6NTac | |