Gene | Rad9b |
Chromosome | 5 |
Deletion Start | 122,354,172 |
Deletion End | 122,325,822 |
Deletion Size | 28,351 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 122,354,108 | 122,354,131 | GGCCATTCTTGCTTTGCTACTTAG |
TUP | 122,354,070 | 122,354,095 | TCTAACGCCTCGTGCAGGGTTTATCC |
TUR | 122,354,049 | 122,354,067 | GAGGAGGCCGAAGAAGACG |
TDF | 122,325,951 | 122,325,972 | GCATGTTCTTTGGAGCTGTATC |
TDP | 122,325,924 | 122,325,947 | TGAACAGCAAGAGTATGCCGGCCA |
TDR | 122,325,876 | 122,325,895 | CTCACGTCCTCCTCACTGTC |
PCR Primers
Primer | Sequence |
SU | GCTCACCATCCTGTCACCAG |
SD | CAGGCCATCACATACACTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17813A-C8 | VGB6 | C57BL/6NTac | |
17813A-F6 | VGB6 | C57BL/6NTac | |
17813A-D11 | VGB6 | C57BL/6NTac | |
17813A-D2 | VGB6 | C57BL/6NTac | |
17813A-B12 | VGB6 | C57BL/6NTac | |