Gene | Zw10 |
Chromosome | 9 |
Deletion Start | 49,078,327 |
Deletion End | 49,055,686 |
Deletion Size | 22,642 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 49,056,431 | 49,056,452 | CCGTGTAATAGCCCTCGTTGTC |
TUP | 49,056,454 | 49,056,482 | TGGATTCAAGCTTTGTAGAACTGGCTGGT |
TUR | 49,056,489 | 49,056,508 | GGCAGGCGAATTTCTGTGAG |
TDF | 49,077,925 | 49,077,947 | GATGGTTATGAGCTGCCATGTAG |
TDP | 49,077,951 | 49,077,977 | CTGGGAGGTGAATTCTGGTCCTCTGAA |
TDR | 49,077,993 | 49,078,011 | GCTCCGGCTAAGAGCACTG |
PCR Primers
Primer | Sequence |
SU | TCTAGCGAAACCAACCCAAC |
SD | GTAATGTGCCCTTAATGCCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 87 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17824A-A2 | VGB6 | C57BL/6NTac | |
17824A-G9 | VGB6 | C57BL/6NTac | |
17824A-C4 | VGB6 | C57BL/6NTac | |
17824A-D4 | VGB6 | C57BL/6NTac | |
17824A-A5 | VGB6 | C57BL/6NTac | |