Gene | Utp23 |
Chromosome | 15 |
Deletion Start | 51,882,546 |
Deletion End | 51,877,526 |
Deletion Size | 5,021 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 51,877,735 | 51,877,753 | GGTGTGGCCCAGAGTTCTC |
TUP | 51,877,756 | 51,877,778 | CGGTGCCAACCAAGTCGGTTACC |
TUR | 51,877,809 | 51,877,828 | TCACAAGGCACAGTACCATC |
TDF | 51,881,558 | 51,881,580 | TCTCTGCCTTCTGGACTCATAAC |
TDP | 51,881,583 | 51,881,612 | AGCATGTTCCTGAATTCCTGCTTCTCAGCT |
TDR | 51,881,630 | 51,881,651 | GCAGCCTCCTGATGCTAATCTC |
PCR Primers
Primer | Sequence |
SU | ACAAAGTGCCTGGGTCAATG |
SD | CCCAACAAGCTCACAAACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17842A-A3 | VGB6 | C57BL/6NTac | |
17842A-A11 | VGB6 | C57BL/6NTac | |
17842A-G12 | VGB6 | C57BL/6NTac | |
17842A-G4 | VGB6 | C57BL/6NTac | |
17842A-E8 | VGB6 | C57BL/6NTac | |