Gene | Xpc |
Chromosome | 6 |
Deletion Start | 91,515,796 |
Deletion End | 91,490,052 |
Deletion Size | 25,745 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,515,502 | 91,515,522 | TGAAGGCTGAGCAGCAGAAAG |
TUP | 91,515,475 | 91,515,499 | TCGCAGTTACCAGGTGTCTCAAGGA |
TUR | 91,515,432 | 91,515,450 | TCTCGCACGCACTAGAGTC |
TDF | 91,490,477 | 91,490,495 | TGCCTGGGCATCTTCTTTC |
TDP | 91,490,449 | 91,490,475 | ACCAGCAGTTCTCACTTACGTACCTGC |
TDR | 91,490,410 | 91,490,428 | CTGCCTTGCTGGCCTTCTC |
PCR Primers
Primer | Sequence |
SU | TGAGAAACTCTGGGCCTACG |
SD | CGTTGTGAACGGCACTAAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 91 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17844A-A9 | VGB6 | C57BL/6NTac | |
17844A-D8 | VGB6 | C57BL/6NTac | |
17844A-D10 | VGB6 | C57BL/6NTac | |
17844A-G9 | VGB6 | C57BL/6NTac | |
17844A-G2 | VGB6 | C57BL/6NTac | |