17878   Sun1     Status: ES cell colonies screened / QC positives

GeneSun1
Chromosome5
Deletion Start139,248,611
Deletion End139,215,181
Deletion Size33,431
Genome Build38
MGI IDMGI:1924303
NCBI Gene ID77053
BAC ID438G13
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF139,215,996139,216,017CACCATGTTTGGTTGGTCAGTC
TUP139,216,019139,216,041AGCTAGCCGGTTTGTTCCTGGGA
TUR139,216,052139,216,072GTCCATAGTCCCAGTGCTCAG
TDF139,248,424139,248,445CCTGACCAAGCCTTCCAGATAG
TDP139,248,446139,248,468TAGAGCTCCGGGTCCTGTCCAAC
TDR139,248,506139,248,524ATGGGCTCTCCGTGGACTC

PCR Primers

PrimerSequence
SUACAAGCATGGAGGTCAGAGG
SDAGTCCCAGCTCAAAGCAGAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR77 bp++-
TDFTDR101 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17878A-E3VGB6C57BL/6NTac
17878A-F9VGB6C57BL/6NTac
17878A-H8VGB6C57BL/6NTac
17878A-E12VGB6C57BL/6NTac