Gene | Sun1 |
Chromosome | 5 |
Deletion Start | 139,248,611 |
Deletion End | 139,215,181 |
Deletion Size | 33,431 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 139,215,996 | 139,216,017 | CACCATGTTTGGTTGGTCAGTC |
TUP | 139,216,019 | 139,216,041 | AGCTAGCCGGTTTGTTCCTGGGA |
TUR | 139,216,052 | 139,216,072 | GTCCATAGTCCCAGTGCTCAG |
TDF | 139,248,424 | 139,248,445 | CCTGACCAAGCCTTCCAGATAG |
TDP | 139,248,446 | 139,248,468 | TAGAGCTCCGGGTCCTGTCCAAC |
TDR | 139,248,506 | 139,248,524 | ATGGGCTCTCCGTGGACTC |
PCR Primers
Primer | Sequence |
SU | ACAAGCATGGAGGTCAGAGG |
SD | AGTCCCAGCTCAAAGCAGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 101 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17878A-E3 | VGB6 | C57BL/6NTac | |
17878A-F9 | VGB6 | C57BL/6NTac | |
17878A-H8 | VGB6 | C57BL/6NTac | |
17878A-E12 | VGB6 | C57BL/6NTac | |