Gene | Sh3gl1 |
Chromosome | 17 |
Deletion Start | 56,036,456 |
Deletion End | 56,017,504 |
Deletion Size | 18,953 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | TCGCTCACTGGGTGTTATACATC |
TUP | | | TCCCTGCACACTTGAGGCAGTCA |
TUR | | | CCTGGCTGGCCTCAAACTC |
TDF | | | TCGTCAGACAAGCCCATCAG |
TDP | | | ATGCCCAGCAAGAGCATGCGTGAG |
TDR | | | AGTAGTCCCTCTCACCCAAC |
PCR Primers
Primer | Sequence |
SU | CGCAGATGCCGTTGTAGG |
SD | TGTGCCTTGTGCACTTCTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17897A-E10 | VGB6 | C57BL/6NTac | |
17897A-C12 | VGB6 | C57BL/6NTac | |