Gene | Set |
Chromosome | 2 |
Deletion Start | 30,071,014 |
Deletion End | 30,062,175 |
Deletion Size | 8,840 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 30,062,589 | 30,062,610 | CCACGAGTCCTGGAGATTCAAG |
TUP | 30,062,613 | 30,062,637 | CGCTCTGATCGTCTCCCTGTTGCTG |
TUR | 30,062,662 | 30,062,683 | ACACGAGGTGGCAGTAATTCAG |
TDF | 30,070,813 | 30,070,833 | TCCCTCCACATCAGTGCTAAG |
TDP | 30,070,838 | 30,070,865 | TGAAGATTCCAGTTTAGGCTGGGAGAGC |
TDR | 30,070,909 | 30,070,930 | GCCTTCGTCCTCCTGAAAGAAC |
PCR Primers
Primer | Sequence |
SU | GGGTGAAGGGAAAGAGGAAG |
SD | GACACAGTGTAATCTCTGAGCCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 118 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17924A-A11 | VGB6 | C57BL/6NTac | |
17924A-B6 | VGB6 | C57BL/6NTac | |
17924A-G12 | VGB6 | C57BL/6NTac | |
17924A-G9 | VGB6 | C57BL/6NTac | |
17924A-H7 | VGB6 | C57BL/6NTac | |