17929   Cdkn2c     Status: ES cell colonies screened / QC positives

GeneCdkn2c
Chromosome4
Deletion Start109,665,143
Deletion End109,661,169
Deletion Size3,975
Genome Build38
MGI IDMGI:105388
NCBI Gene ID12580
BAC ID416F8
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 4

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF109,664,528109,664,550ACGACCTTTCCTCGCTTGGTATG
TUP109,664,504109,664,525ATAGCCTGGGCACCCGGACAGG
TUR109,664,453109,664,475TCACTCCTGAATGGGTGGATTAG
TDF109,661,500109,661,521AGAGCAGGTTTCCTGGACACTG
TDP109,661,475109,661,497CAGGCTTTGCTGGAGTTCCAGGC
TDR109,661,403109,661,423ACAGGGAGGTGGCCTTCTTTG

PCR Primers

PrimerSequence
SUGTCTCCGCAACATCTTCCTC
SDACACCAGGCTTCCAATGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR98 bp++-
TDFTDR119 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17929A-H6VGB6C57BL/6NTac
17929A-C4VGB6C57BL/6NTac
17929A-A9VGB6C57BL/6NTac
17929A-D1VGB6C57BL/6NTac