Gene | Cdkn2c |
Chromosome | 4 |
Deletion Start | 109,665,143 |
Deletion End | 109,661,169 |
Deletion Size | 3,975 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 109,664,528 | 109,664,550 | ACGACCTTTCCTCGCTTGGTATG |
TUP | 109,664,504 | 109,664,525 | ATAGCCTGGGCACCCGGACAGG |
TUR | 109,664,453 | 109,664,475 | TCACTCCTGAATGGGTGGATTAG |
TDF | 109,661,500 | 109,661,521 | AGAGCAGGTTTCCTGGACACTG |
TDP | 109,661,475 | 109,661,497 | CAGGCTTTGCTGGAGTTCCAGGC |
TDR | 109,661,403 | 109,661,423 | ACAGGGAGGTGGCCTTCTTTG |
PCR Primers
Primer | Sequence |
SU | GTCTCCGCAACATCTTCCTC |
SD | ACACCAGGCTTCCAATGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 98 bp | + | + | - |
TDF | TDR | 119 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17929A-H6 | VGB6 | C57BL/6NTac | |
17929A-C4 | VGB6 | C57BL/6NTac | |
17929A-A9 | VGB6 | C57BL/6NTac | |
17929A-D1 | VGB6 | C57BL/6NTac | |