Gene | Snupn |
Chromosome | 9 |
Deletion Start | 56,983,068 |
Deletion End | 56,957,022 |
Deletion Size | 26,047 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 56,957,770 | 56,957,788 | GCTGTGCCACTTGCATCTC |
TUP | 56,957,790 | 56,957,818 | TCTGGACTTTGTGAGGTGCTATGTCAGTA |
TUR | 56,957,844 | 56,957,866 | GATCAGCAGACAACTCAGAACTC |
TDF | 56,982,405 | 56,982,427 | GCATGGTTGCACCTCCTTTAATC |
TDP | 56,982,428 | 56,982,450 | TCAGCACTCAGAAGGTGGAGGCT |
TDR | 56,982,473 | 56,982,496 | TGTCCTGCTACATAGACCAAACTG |
PCR Primers
Primer | Sequence |
SU | TTTTTTTTTAGTGCTTTGTTTTG |
SD | GTGGGCCAGGATCTCAATAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 92 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17934A-H10 | VGB6 | C57BL/6NTac | |
17934A-F10 | VGB6 | C57BL/6NTac | |
17934A-E11 | VGB6 | C57BL/6NTac | |
17934A-C9 | VGB6 | C57BL/6NTac | |