17934   Snupn     Status: ES cell colonies screened / QC positives

GeneSnupn
Chromosome9
Deletion Start56,983,068
Deletion End56,957,022
Deletion Size26,047
Genome Build38
MGI IDMGI:1913319
NCBI Gene ID66069
BAC ID41C1
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 9

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF56,957,77056,957,788GCTGTGCCACTTGCATCTC
TUP56,957,79056,957,818TCTGGACTTTGTGAGGTGCTATGTCAGTA
TUR56,957,84456,957,866GATCAGCAGACAACTCAGAACTC
TDF56,982,40556,982,427GCATGGTTGCACCTCCTTTAATC
TDP56,982,42856,982,450TCAGCACTCAGAAGGTGGAGGCT
TDR56,982,47356,982,496TGTCCTGCTACATAGACCAAACTG

PCR Primers

PrimerSequence
SUTTTTTTTTTAGTGCTTTGTTTTG
SDGTGGGCCAGGATCTCAATAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR97 bp++-
TDFTDR92 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17934A-H10VGB6C57BL/6NTac
17934A-F10VGB6C57BL/6NTac
17934A-E11VGB6C57BL/6NTac
17934A-C9VGB6C57BL/6NTac