Gene | Qars |
Chromosome | 9 |
Deletion Start | 108,515,938 |
Deletion End | 108,508,086 |
Deletion Size | 7,853 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 108,508,635 | 108,508,653 | CAGGCACTGAGGCATGGAG |
TUP | 108,508,655 | 108,508,680 | TAGAGACCTCTGGTGTGGATTGCAGA |
TUR | 108,508,681 | 108,508,702 | GCAGGCTTCTCATTGTGGTAAC |
TDF | 108,514,958 | 108,514,979 | TGGCTACAGATTCCAGCACAAG |
TDP | 108,514,983 | 108,515,005 | CCCGAAGACCCTGTTGAAGTGCC |
TDR | 108,515,020 | 108,515,038 | CCTACCGGGTTCAGGTCAC |
PCR Primers
Primer | Sequence |
SU | GGATAGTGTCGGGTTCCTTG |
SD | AACTGGAAAGGCCACAACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 68 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17996A-B4 | VGB6 | C57BL/6NTac | |
17996A-G3 | VGB6 | C57BL/6NTac | |