Gene | Mis18bp1 |
Chromosome | 12 |
Deletion Start | 65,161,934 |
Deletion End | 65,133,450 |
Deletion Size | 28,485 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 65,161,252 | 65,161,271 | TGGGACCGAAGAGAGAGAAC |
TUP | 65,161,225 | 65,161,251 | TGCAGACATGGTATCAAATCCCAGCAC |
TUR | 65,161,189 | 65,161,210 | CAAACTTGAGGCCAACCTAGAC |
TDF | 65,134,284 | 65,134,306 | AAGCAGTACCAGCCTTATTACAC |
TDP | 65,134,259 | 65,134,282 | AAGCAAGTGACTAGACTTTTCTAA |
TDR | 65,134,230 | 65,134,249 | GCCGTTGCCATTATCCAAAC |
PCR Primers
Primer | Sequence |
SU | TGAATGTCAAACTGCTCGTC |
SD | GGCTTGTAATTTCAGGCTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 77 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18000A-C9 | VGB6 | C57BL/6NTac | |
18000A-D8 | VGB6 | C57BL/6NTac | |
18000A-E3 | VGB6 | C57BL/6NTac | |
18000A-C6 | VGB6 | C57BL/6NTac | |