Gene | Mrps21 |
Chromosome | 3 |
Deletion Start | 95,870,573 |
Deletion End | 95,862,745 |
Deletion Size | 7,829 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,870,450 | 95,870,468 | ACCAGCCGTGGGAAATGTG |
TUP | 95,870,425 | 95,870,446 | TGATCCTGCACCCAGCCTACCA |
TUR | 95,870,395 | 95,870,413 | GAGCTGGCACCAGTGGTAG |
TDF | 95,863,688 | 95,863,708 | TGTGGGACATGGGAAATGGTG |
TDP | 95,863,660 | 95,863,685 | TGAGGCTGTTGCAATGCTCTCCTTTG |
TDR | 95,863,631 | 95,863,651 | AAACACAGGCCCTCGTCATAG |
PCR Primers
Primer | Sequence |
SU | CGTAGTGAAAGAAATGTTGCTAAC |
SD | CTAGCAACAAATATTACTGCTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18011A-A7 | VGB6 | C57BL/6NTac | |
18011A-A11 | VGB6 | C57BL/6NTac | |
18011A-C4 | VGB6 | C57BL/6NTac | |
18011A-G12 | VGB6 | C57BL/6NTac | |