Gene | Mpi |
Chromosome | 9 |
Deletion Start | 57,552,716 |
Deletion End | 57,544,669 |
Deletion Size | 8,048 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 57,552,113 | 57,552,134 | CTGCACATCAGTCCACTTTACC |
TUP | 57,552,085 | 57,552,111 | TGAGACCAAAGGATCTGACACAAGCCA |
TUR | 57,552,055 | 57,552,075 | GCTACAGAGATTCCTCCCAAC |
TDF | 57,544,801 | 57,544,819 | CCGTGGTGGAGTGCTCTTC |
TDP | 57,544,770 | 57,544,798 | TGCAGCCAATGAGAGTGTCTTACTGAAGA |
TDR | 57,544,729 | 57,544,749 | ACAGCAGGCCCGGAATATCAG |
PCR Primers
Primer | Sequence |
SU | TACATACGGGTAAAAGAAGGC |
SD | CCAAAGGCTGACTGCTCTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18072A-A2 | VGB6 | C57BL/6NTac | |
18072A-C3 | VGB6 | C57BL/6NTac | |
18072A-C12 | VGB6 | C57BL/6NTac | |