Gene | Ing5 |
Chromosome | 1 |
Deletion Start | 93,818,330 |
Deletion End | 93,804,006 |
Deletion Size | 14,325 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 93,804,720 | 93,804,738 | GTGGGACTCCAAGGTGAAC |
TUP | 93,804,740 | 93,804,769 | ATCTTTATTCTGATGTCCATCCAGTGGGCA |
TUR | 93,804,787 | 93,804,808 | TCAGCAGTGAAATGAACTCTCC |
TDF | 93,817,492 | 93,817,513 | GTTTGTGGGATTTCCAGGTGAG |
TDP | 93,817,516 | 93,817,539 | AGTCCAACCGCACTGGCAAAGCTG |
TDR | 93,817,569 | 93,817,587 | ACATGAGGCGGCTGTGAGG |
PCR Primers
Primer | Sequence |
SU | CATGGAAGTTAACCGATGCC |
SD | ACAGACAGTCCTGGAAACCG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 96 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18142B-C10 | VGB6 | C57BL/6NTac | |
18142B-B3 | VGB6 | C57BL/6NTac | |
18142B-D10 | VGB6 | C57BL/6NTac | |