Gene | Nr4a1 |
Chromosome | 15 |
Deletion Start | 101,274,287 |
Deletion End | 101,270,088 |
Deletion Size | 4,200 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 101,270,607 | 101,270,627 | TGGACAGAGCAGTTGCCTAAG |
TUP | 101,270,630 | 101,270,651 | TTCTTCAGGGCCTCCGCCACCT |
TUR | 101,270,657 | 101,270,678 | GGGAGGACTGAAGGAGAAGAAG |
TDF | 101,274,057 | 101,274,077 | TCTGAAGGAGCACATGGCTAC |
TDP | 101,274,080 | 101,274,099 | TGGCAGGAGACCCACAGCCG |
TDR | 101,274,126 | 101,274,145 | TCCGAAGCTCAGGCAGTTTG |
PCR Primers
Primer | Sequence |
SU | GACAGCCTTTCCTAGCTCC |
SD | ATGGAAGGAGAGCGGAAGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18145A-A6 | VGB6 | C57BL/6NTac | |
18145A-A10 | VGB6 | C57BL/6NTac | |
18145A-C10 | VGB6 | C57BL/6NTac | |
18145A-E5 | VGB6 | C57BL/6NTac | |