Gene | Acot8 |
Chromosome | 2 |
Deletion Start | 164,804,814 |
Deletion End | 164,792,840 |
Deletion Size | 11,975 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 164,804,734 | 164,804,753 | ACCTCCGTAGTGTGCTGGTC |
TUP | 164,804,711 | 164,804,733 | ACGAGCGTGCTCAACCTCGAGCC |
TUR | 164,804,655 | 164,804,673 | GGGTGCGAGCCTAGTTCAG |
TDF | 164,793,099 | 164,793,119 | GTTCCAGTGTGCGGTTGTATG |
TDP | 164,793,072 | 164,793,095 | ACAGCTCTGCCCTGTGTCAGATCC |
TDR | 164,793,012 | 164,793,035 | TGTAAGCAAGGAGAAGGTGAGATG |
PCR Primers
Primer | Sequence |
SU | GAGTGAGTGGCTTACAGGGC |
SD | CTCCTGTCTTAAGGCCATGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 99 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18147A-F5 | VGB6 | C57BL/6NTac | |
18147A-E6 | VGB6 | C57BL/6NTac | |
18147A-E12 | VGB6 | C57BL/6NTac | |
18147A-A9 | VGB6 | C57BL/6NTac | |