Gene | Bnip3l |
Chromosome | 14 |
Deletion Start | 67,008,781 |
Deletion End | 66,987,650 |
Deletion Size | 21,132 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 14
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 67,008,044 | 67,008,063 | TGGCCTCACTCGTTGTGTTG |
TUP | 67,008,015 | 67,008,042 | TGAGTGACCTGATCCCTCCTACTTTCCA |
TUR | 67,007,988 | 67,008,005 | CGCCTGTCACCCAAGAAC |
TDF | 66,987,853 | 66,987,871 | AGGGCTGTCCCAGCTTGTC |
TDP | 66,987,824 | 66,987,847 | AGATCTCCCTATGGGCCAGGCTGC |
TDR | 66,987,774 | 66,987,797 | TGCTGTAAGGAAGCAGAGTGTATC |
PCR Primers
Primer | Sequence |
SU | TCCAATGCCAACTTCCTAGC |
SD | TTGCAAACCTGACCTCATTTAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 98 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18148A-C7 | VGB6 | C57BL/6NTac | |
18148A-E10 | VGB6 | C57BL/6NTac | |