Gene | Ccdc127 |
Chromosome | 13 |
Deletion Start | 74,357,124 |
Deletion End | 74,352,869 |
Deletion Size | 4,256 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 74,353,601 | 74,353,625 | TCGCATCCTATGTGATTTCAAGAAG |
TUP | 74,353,626 | 74,353,653 | TCACAGTGTAGTGTGGGAGGCATGTCTC |
TUR | 74,353,722 | 74,353,742 | TGACAACCAGGACCACAAGAC |
TDF | 74,356,910 | 74,356,929 | GCGCACATCTGTTGATCCAG |
TDP | 74,356,930 | 74,356,952 | TGGCTGCTGACCTAGAAATGGCA |
TDR | 74,356,990 | 74,357,010 | TGGTGTTCCAGACATCTCCAC |
PCR Primers
Primer | Sequence |
SU | GGTTTGTGATGGTATGTGTGC |
SD | CATGAAATCAGGAAAGGGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 142 bp | + | + | - |
TDF | TDR | 101 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18211A-A10 | VGB6 | C57BL/6NTac | |
18211A-E5 | VGB6 | C57BL/6NTac | |
18211A-G9 | VGB6 | C57BL/6NTac | |
18211A-F9 | VGB6 | C57BL/6NTac | |
18211A-F4 | VGB6 | C57BL/6NTac | |