Gene | Pafah1b3 |
Chromosome | 7 |
Deletion Start | 25,297,449 |
Deletion End | 25,295,026 |
Deletion Size | 2,424 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 25,297,189 | 25,297,209 | GCGTGCCTTTGACTCTTTCTG |
TUP | 25,297,161 | 25,297,186 | TTTCTCTGCAGCACCATCGGTTTGTA |
TUR | 25,297,128 | 25,297,152 | GACTACTTCGGGTTCCTTGTCTTTG |
TDF | 25,295,243 | 25,295,262 | GACCCTGGGTTTGTGCATTC |
TDP | 25,295,213 | 25,295,242 | TGATGGCACCATAAGTCACCATGACATGTA |
TDR | 25,295,191 | 25,295,211 | GCGGCTCAGGTGTAGGTAATC |
PCR Primers
Primer | Sequence |
SU | TAGATTGTCCCTGGTCCCTG |
SD | CAGAGCACCAGGAAGTTAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 82 bp | + | + | - |
TDF | TDR | 72 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18284A-C5 | VGB6 | C57BL/6NTac | |
18284A-F12 | VGB6 | C57BL/6NTac | |
18284A-H4 | VGB6 | C57BL/6NTac | |
18284A-D3 | VGB6 | C57BL/6NTac | |