Gene | Spire2 |
Chromosome | 8 |
Deletion Start | 123,369,425 |
Deletion End | 123,332,768 |
Deletion Size | 36,658 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 123,333,107 | 123,333,127 | GGCCTCGACCTTTCTCACATC |
TUP | 123,333,132 | 123,333,155 | CCCAGATAGCGCTCTACCGGACCG |
TUR | 123,333,174 | 123,333,195 | ACAAGGAGTCCCAGATCCAGAG |
TDF | 123,369,256 | 123,369,275 | CAGTGACTGCACCAGCTTTG |
TDP | 123,369,276 | 123,369,296 | TGGCTGATGTCGTGTGCTCCA |
TDR | 123,369,317 | 123,369,335 | GTCGTGGAGTGGCATTGAG |
PCR Primers
Primer | Sequence |
SU | GGTTTCTAACAAACCTTAGTCC |
SD | AAGCTGCCACACACTCACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 80 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18335A-D1 | VGB6 | C57BL/6NTac | |