Gene | Actn3 |
Chromosome | 19 |
Deletion Start | 4,877,851 |
Deletion End | 4,861,345 |
Deletion Size | 16,507 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | GGGCATCTGGGCAGTTCAAG |
TUP | | | CAGAGCCTGGCTGTAATCTAGAGTGCA |
TUR | | | TGGGCAGAGCCTGGTTTG |
TDF | | | GAAGCGGAATGGGATGATGGAG |
TDP | | | CCGACGACTTCCGAGCTTGTCTCA |
TDR | | | TGGCACTCACCAGATCGTAAC |
PCR Primers
Primer | Sequence |
SU | GCAATGCTTAGGAGGGACAG |
SD | TAAGTGCTTAGTCTCTGAAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
18679A-D9 | VGB6 | C57BL/6NTac | |
18679A-E1 | VGB6 | C57BL/6NTac | |
18679A-G8 | VGB6 | C57BL/6NTac | |