| Gene | Smarce1 |
| Chromosome | 11 |
| Deletion Start | 99,228,500 |
| Deletion End | 99,210,002 |
| Deletion Size | 18,499 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | | | TCAGGCCAGGGTTTCGTTAC |
| TUP | | | CCATGGGTCAGCTCTTGCTACTGGA |
| TUR | | | GTTCACAACCATTGGACACCTTC |
| TDF | | | TGGTGATTTGACTGCATGTATCTC |
| TDP | | | TGTAAGTGTTGGTCTGGATCTCCTGGA |
| TDR | | | GTCAATCAGCAGCTCACAACTG |
PCR Primers
| Primer | Sequence |
| SU | TTCCATACAAGACGCTGCTC |
| SD | TCTGGCTACACCCTACCCTG |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 19478A-B12 | VGB6 | C57BL/6NTac | |
| 19478A-C10 | VGB6 | C57BL/6NTac | |
| 19478A-E12 | VGB6 | C57BL/6NTac | |
