Gene | Prkcq |
Chromosome | 2 |
Deletion Start | 11,256,312 |
Deletion End | 11,226,871 |
Deletion Size | 29,442 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | CAAGCACTTGGGAGACGAGAC |
TUP | | | CCAGGATGTCTGATGGAACTGAATGTCACA |
TUR | | | AAAGAATTTGGCCTTTGTTGGTCAC |
TDF | | | GTCCTCCTGAACCCGAAGTG |
TDP | | | AGCATGCGCAGGACTTCACTGCA |
TDR | | | TTCCTTTTCCCAACATCTTGTGC |
PCR Primers
Primer | Sequence |
SU | TGGGCACCTATGTGAAGAAAC |
SD | TCCTTGGTGCTCAGGCATC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
19739A-A12 | VGB6 | C57BL/6NTac | |
19739A-B10 | VGB6 | C57BL/6NTac | |
19739A-D9 | VGB6 | C57BL/6NTac | |
19739A-G9 | VGB6 | C57BL/6NTac | |
19739A-H4 | VGB6 | C57BL/6NTac | |